Unable to install hexbin in RStudio

November 12, 2019 @Jason.C Jason G Craggs

@Jason.C wrote:

Greetings,

I recently updated R and RStudio. Consequently, I have to reinstall a good number of packages, some with difficulty. In particular, reinstalling hexbin is quite problematic.
I’ve reinstalled my gcc compiler without success.
Any help would be greatly appreciated.

Cheers,
Jason

install.packages("hexbin")
#> 
#>   There is a binary version available but the source version is
#>   later:
#>        binary source needs_compilation
#> hexbin 1.27.3 1.28.0              TRUE
#> installing the source package 'hexbin'
#> Warning in install.packages("hexbin"): installation of package 'hexbin' had
#> non-zero exit status

Created on 2019-11-12 by the reprex package (v0.3.0)

Other console messages include:

* installing *source* package ‘hexbin’ ...
** package ‘hexbin’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gfortran  -fPIC  -Wall -g -O2  -c hbin.f -o hbin.o
f951: Warning: Nonconforming tab character in column 1 of line 1 [-Wtabs]
.
.
.
f951: Warning: Nonconforming tab character in column 1 of line 88 [-Wtabs]
hbin.f:49:13:

   49 |    j1 = sx+.5
      |             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
hbin.f:50:13:

   50 |    i1 = sy+.5
      |             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
hbin.f:58:15:

   58 |      j2 = sx
      |               1

Warning: Nonconforming tab character at (1) [-Wtabs]
gfortran  -fPIC  -Wall -g -O2  -c hsm.f -o hsm.o


clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c reg.c -o reg.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o reg.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [hexbin.so] Error 1
ERROR: compilation failed for package ‘hexbin’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/hexbin’
Warning in install.packages :
  installation of package ‘hexbin’ had non-zero exit status



System information
iMac OS Version: 10.14.6
RAM: 24BG

R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

RStudio version 1.2.5019

Posts: 2

Participants: 2

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